| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Barry Bonds SF |
| 2 | 19th | C Ivan Rodriguez Tex |
| 3 | 30th | P Randy Johnson Ari |
| 4 | 43rd | P Jeff Shaw LA |
| 5 | 54th | 1B Tony Clark Det |
| 6 | 67th | 3B Travis Fryman Cle |
| 7 | 78th | P Troy Percival Ana |
| 8 | 91st | P Shane Reynolds Hou |
| 9 | 102nd | OF David Justice Cle |
| 10 | 115th | 2B Bret Boone Atl |
| 11 | 126th | SS Omar Vizquel Cle |
| 12 | 139th | P Denny Neagle Cin |
| 13 | 150th | 1B Kevin Young Pit |
| 14 | 163rd | OF Jose Cruz Jr Tor |
| 15 | 174th | P Mike Hampton Hou |
| 16 | 187th | P Todd Jones Det |
| 17 | 198th | SS Miguel Tejada Oak |
| 18 | 211th | OF Tony Womack Ari |
| 19 | 222nd | P Brian Anderson Ari |
| 20 | 235th | OF Doug Glanville Phi |
| 21 | 246th | P Dave Burba Cle |
| 22 | 259th | C Brad Ausmus Det |
| 23 | 270th | P Sean Bergman Hou |
| 24 | 283rd | OF Quinton McCracken TB |
| 25 | 294th | P Woody Williams SD |
| 26 | 307th | 3B Jose Hernandez ChN |
| 27 | 318th | P Jimmy Haynes Oak |