| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Sea |
| 2 | 23rd | 3B Scott Rolen Phi |
| 3 | 26th | 2B Jeff Kent SF |
| 4 | 47th | P Tom Gordon Bos |
| 5 | 50th | P John Smoltz Atl |
| 6 | 71st | P Al Leiter NYN |
| 7 | 74th | 1B Todd Helton Col |
| 8 | 95th | OF Rondell White Mon |
| 9 | 98th | P Rod Beck ChN |
| 10 | 119th | 2B Jay Bell Ari |
| 11 | 122nd | OF Derek Bell Hou |
| 12 | 143rd | P Andy Pettitte NYA |
| 13 | 146th | 1B Eric Karros LA |
| 14 | 167th | P Chris Carpenter Tor |
| 15 | 170th | C Eddie Taubensee Cin |
| 16 | 191st | OF Mike Cameron Cin |
| 17 | 194th | P Ramon Martinez Bos |
| 18 | 215th | OF Moises Alou Hou |
| 19 | 218th | SS Rich Aurilia SF |
| 20 | 239th | P Joey Hamilton Tor |
| 21 | 242nd | OF Devon White LA |
| 22 | 263rd | 3B Adrian Beltre LA |
| 23 | 266th | OF Carl Everett Hou |
| 24 | 287th | C Kelly Stinnett Ari |
| 25 | 290th | OF Trot Nixon Bos |
| 26 | 311th | P Roy Halladay Tor |
| 27 | 314th | DH Mike Stanley Bos |