| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Craig Biggio Hou |
| 2 | 13th | P Greg Maddux Atl |
| 3 | 36th | 3B Dean Palmer Det |
| 4 | 37th | P Tom Glavine Atl |
| 5 | 60th | 1B Jason Giambi Oak |
| 6 | 61st | OF Dante Bichette Col |
| 7 | 84th | OF Bob Higginson Det |
| 8 | 85th | SS Neifi Perez Col |
| 9 | 108th | OF Bobby Abreu Phi |
| 10 | 109th | P Scott Erickson Bal |
| 11 | 132nd | 3B Scott Brosius NYA |
| 12 | 133rd | 1B Jay Buhner Sea |
| 13 | 156th | C Dan Wilson Sea |
| 14 | 157th | P Jamie Moyer Sea |
| 15 | 180th | OF Johnny Damon KC |
| 16 | 181st | P Pete Harnisch Cin |
| 17 | 204th | OF David Segui Sea |
| 18 | 205th | 2B Andy Fox Ari |
| 19 | 228th | C Jeff Reed Col |
| 20 | 229th | P Tim Wakefield Bos |
| 21 | 252nd | OF Brant Brown Pit |
| 22 | 253rd | 1B Sean Casey Cin |
| 23 | 276th | P Tim Belcher Ana |
| 24 | 277th | P Scott Elarton Hou |
| 25 | 300th | P Jerry Dipoto Col |
| 26 | 301st | P Tim Crabtree Tex |
| 27 | 324th | OF Tom Goodwin Tex |