| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SS Nomar Garciaparra Bos |
| 2 | 20th | P Roger Clemens NYA |
| 3 | 29th | 2B Jeff Kent SF |
| 4 | 44th | OF Greg Vaughn Cin |
| 5 | 53rd | OF Shawn Green Tor |
| 6 | 68th | P Al Leiter NYN |
| 7 | 77th | P Ugueth Urbina Mon |
| 8 | 92nd | OF Carl Everett Hou |
| 9 | 101st | 1B Rico Brogna Phi |
| 10 | 116th | DH Matt Stairs Oak |
| 11 | 125th | 3B Fernando Tatis StL |
| 12 | 140th | P Andy Ashby SD |
| 13 | 149th | P Matt Mantei Fla |
| 14 | 164th | 3B Russ Davis Sea |
| 15 | 173rd | P Omar Daal Ari |
| 16 | 188th | OF Todd Dunwoody Fla |
| 17 | 197th | P Ricky Bottalico StL |
| 18 | 212th | C Mike Sweeney KC |
| 19 | 221st | P Donovan Osborne StL |
| 20 | 236th | P Jose Jimenez StL |
| 21 | 245th | 1B Derrek Lee Fla |
| 23 | 269th | C Chris Hoiles Bal |
| 24 | 284th | OF Bernard Gilkey Ari |
| 25 | 293rd | 2B Mickey Morandini ChN |
| 26 | 308th | 2B Luis Castillo Fla |
| 27 | 317th | SS Jeff Blauser ChN |