| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | C Ivan Rodriguez Tex |
| 3 | 25th | OF Juan Gonzalez Tex |
| 4 | 48th | OF Andruw Jones Atl |
| 5 | 49th | OF Shannon Stewart Tor |
| 6 | 72nd | P Shane Reynolds Hou |
| 7 | 73rd | 1B Todd Helton Col |
| 8 | 96th | P Roberto Hernandez TB |
| 9 | 97th | DH Edgar Martinez Sea |
| 10 | 120th | 3B Eric Chavez Oak |
| 11 | 121st | P Billy Taylor Oak |
| 12 | 144th | P Matt Clement SD |
| 13 | 145th | P Todd Jones Det |
| 14 | 168th | P Bruce Chen Atl |
| 15 | 169th | OF Brian L. Hunter Det |
| 16 | 192nd | C Mike Lieberthal Phi |
| 17 | 193rd | OF Tony Womack Ari |
| 18 | 216th | 2B Quilvio Veras SD |
| 19 | 217th | P Jeff Montgomery KC |
| 20 | 240th | SS Alex Gonzalez Fla |
| 21 | 241st | 1B Brad Fullmer Mon |
| 22 | 264th | P Wayne Gomes Phi |
| 23 | 265th | P Matt Anderson Det |
| 24 | 288th | OF Ruben Rivera SD |
| 25 | 289th | 2B Marlon Anderson Phi |
| 26 | 312th | P Chad Ogea Phi |
| 27 | 313th | OF Fernando Seguignol Mon |