| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Barry Bonds SF |
| 2 | 19th | 1B Mo Vaughn Ana |
| 3 | 30th | OF Larry Walker Col |
| 4 | 43rd | DH Frank Thomas ChA |
| 5 | 54th | P Robb Nen SF |
| 6 | 67th | P Troy Percival Ana |
| 7 | 78th | P Mike Jackson Cle |
| 8 | 91st | 3B Robin Ventura NYN |
| 9 | 102nd | OF Brady Anderson Bal |
| 10 | 115th | P Kenny Rogers Oak |
| 11 | 126th | P Andy Pettitte NYA |
| 12 | 139th | 2B Jay Bell Ari |
| 13 | 150th | P Scott Erickson Bal |
| 14 | 163rd | P Shawn Estes SF |
| 15 | 174th | 1B Will Clark Bal |
| 16 | 187th | P John Rocker Atl |
| 17 | 198th | SS Pat Meares Pit |
| 18 | 211th | OF Trot Nixon Bos |
| 19 | 222nd | C Todd Hundley LA |
| 20 | 235th | P Mark Gardner SF |
| 21 | 246th | C Terry Steinbach Min |
| 22 | 259th | P Juan Guzman Bal |
| 23 | 270th | SS Orlando Cabrera Mon |
| 24 | 283rd | 3B Bill Mueller SF |
| 25 | 294th | P Mark Mulder Oak |
| 26 | 307th | OF Steve Finley Ari |
| 27 | 318th | P James Baldwin ChA |