| Round | Overall | Player |
|---|---|---|
| 1 | 9th | P Pedro Martinez Bos |
| 2 | 16th | C Javy Lopez Atl |
| 3 | 33rd | OF Vladimir Guerrero Mon |
| 4 | 40th | 2B Todd Walker Min |
| 5 | 57th | P Billy Wagner Hou |
| 6 | 64th | 3B John Valentin Bos |
| 7 | 81st | SS Edgar Renteria StL |
| 8 | 88th | 1B Travis Lee Ari |
| 9 | 105th | P Dustin Hermanson Mon |
| 10 | 112th | OF Cliff Floyd Fla |
| 11 | 129th | P Rod Beck ChN |
| 12 | 136th | P Rolando Arrojo TB |
| 13 | 153rd | P Scott Elarton Hou |
| 14 | 160th | OF Doug Glanville Phi |
| 15 | 177th | P Andy Benes Ari |
| 16 | 184th | OF Johnny Damon KC |
| 17 | 201st | C Eddie Taubensee Cin |
| 18 | 208th | P Armando Benitez NYN |
| 19 | 225th | P Jason Schmidt Pit |
| 20 | 232nd | OF Ellis Burks SF |
| 21 | 249th | OF David Segui Sea |
| 22 | 256th | SS Walt Weiss Atl |
| 23 | 273rd | P Jose Rosado KC |
| 24 | 280th | P Kerry Wood ChN |
| 25 | 297th | DH Mike Stanley Bos |
| 26 | 304th | P Bret Saberhagen Bos |
| 27 | 321st | 3B Aramis Ramirez Pit |