| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Derek Jeter NYA |
| 2 | 16th | 1B Jeff Bagwell Hou |
| 3 | 33rd | OF Vladimir Guerrero Mon |
| 4 | 40th | P Troy Percival Ana |
| 5 | 57th | 3B Ken Caminiti Hou |
| 6 | 64th | 2B Damion Easley Det |
| 7 | 81st | OF Jeromy Burnitz Mil |
| 8 | 88th | DH Jose Canseco TB |
| 9 | 105th | OF Jose Cruz Jr Tor |
| 10 | 112th | P Jeff Fassero Sea |
| 11 | 129th | P John Franco NYN |
| 12 | 136th | P Kevin Tapani ChN |
| 13 | 153rd | P Bobby J. Jones NYN |
| 14 | 160th | P Rick Helling Tex |
| 15 | 177th | C Mike Lieberthal Phi |
| 16 | 184th | P Robert Person Tor |
| 17 | 201st | OF Reggie Sanders SD |
| 18 | 208th | P Hideki Irabu NYA |
| 19 | 225th | 1B Will Clark Bal |
| 20 | 232nd | C Brad Ausmus Det |
| 21 | 249th | 3B Aaron Boone Cin |
| 22 | 256th | OF Brian McRae NYN |
| 23 | 273rd | 2B Scott Spiezio Oak |
| 24 | 280th | P Matt Mantei Fla |
| 25 | 297th | SS Rich Aurilia SF |
| 26 | 304th | 1B Wil Cordero Cle |
| 27 | 321st | P Sean Bergman Hou |