| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Mark McGwire StL |
| 2 | 23rd | OF Bernie Williams NYA |
| 3 | 26th | 1B Jim Thome Cle |
| 4 | 47th | P Billy Wagner Hou |
| 5 | 50th | P Curt Schilling Phi |
| 6 | 71st | P Chan Ho Park LA |
| 7 | 74th | P Francisco Cordova Pit |
| 8 | 95th | 3B Matt Williams Ari |
| 9 | 98th | OF Juan Encarnacion Det |
| 10 | 119th | 3B Troy Glaus Ana |
| 11 | 122nd | OF Eric Davis StL |
| 12 | 143rd | P Jose Mesa Sea |
| 13 | 146th | P Kelvim Escobar Tor |
| 14 | 167th | OF Magglio Ordonez ChA |
| 15 | 170th | P Mark Wohlers Atl |
| 16 | 191st | 3B Jose Hernandez ChN |
| 17 | 194th | 3B Adrian Beltre LA |
| 18 | 215th | C Todd Greene Ana |
| 19 | 218th | P Ken Hill Ana |
| 20 | 239th | 1B Paul Konerko ChA |
| 22 | 263rd | P Jose Jimenez StL |
| 23 | 266th | P Tony Saunders TB |
| 24 | 287th | SS Mark Loretta Mil |
| 25 | 290th | C Jason Varitek Bos |
| 27 | 314th | OF Gabe Kapler Det |