| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Barry Bonds SF |
| 2 | 19th | C Jason Kendall Pit |
| 3 | 30th | P Jeff Shaw LA |
| 4 | 43rd | P Tom Gordon Bos |
| 5 | 54th | OF Paul O'Neill NYA |
| 6 | 67th | 1B Kevin Young Pit |
| 7 | 78th | OF Ray Lankford StL |
| 8 | 91st | 1B Jason Giambi Oak |
| 9 | 102nd | OF Derek Bell Hou |
| 10 | 115th | SS Omar Vizquel Cle |
| 11 | 126th | P Rick Aguilera Min |
| 12 | 139th | 3B Scott Brosius NYA |
| 13 | 150th | P Gregg Olson Ari |
| 14 | 163rd | SS Neifi Perez Col |
| 15 | 174th | 2B Jay Bell Ari |
| 16 | 187th | 1B Rico Brogna Phi |
| 17 | 198th | P Jeff Montgomery KC |
| 18 | 211th | P Bob Howry ChA |
| 19 | 222nd | P Jeff Brantley Phi |
| 20 | 235th | P Bob Wickman Mil |
| 21 | 246th | OF Troy O'Leary Bos |
| 22 | 259th | C Scott Hatteberg Bos |
| 23 | 270th | P Doug Johns Bal |
| 24 | 283rd | P Jerry Dipoto Col |
| 25 | 294th | C Kelly Stinnett Ari |
| 26 | 307th | 2B Joey Cora Tor |
| 27 | 318th | 3B Wade Boggs TB |