| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | C Javy Lopez Atl |
| 3 | 25th | P Greg Maddux Atl |
| 4 | 48th | 1B Tino Martinez NYA |
| 5 | 49th | P John Smoltz Atl |
| 6 | 72nd | OF Shawn Green Tor |
| 7 | 73rd | OF Darin Erstad Ana |
| 8 | 96th | P Shane Reynolds Hou |
| 9 | 97th | OF David Segui Sea |
| 10 | 120th | 3B Todd Zeile Tex |
| 11 | 121st | P Andy Ashby SD |
| 12 | 144th | OF Cliff Floyd Fla |
| 13 | 145th | 2B Mike Lansing Col |
| 14 | 168th | 1B Jose Offerman Bos |
| 15 | 169th | P Jaret Wright Cle |
| 16 | 192nd | DH Chili Davis NYA |
| 17 | 193rd | P Juan Acevedo StL |
| 18 | 216th | P Charles Nagy Cle |
| 19 | 217th | OF Brian S. Giles Pit |
| 20 | 240th | 3B Bill Mueller SF |
| 21 | 241st | OF Carl Everett Hou |
| 22 | 264th | C Jim Leyritz SD |
| 23 | 265th | P Matt Clement SD |
| 24 | 288th | P Mike Sirotka ChA |
| 25 | 289th | P Roy Halladay Tor |
| 26 | 312th | P Gabe White Cin |
| 27 | 313th | P Willie Blair Det |