| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Juan Gonzalez Tex |
| 2 | 15th | 3B Vinny Castilla Col |
| 3 | 34th | P John Smoltz Atl |
| 4 | 39th | P Jeff Shaw LA |
| 5 | 58th | DH Edgar Martinez Sea |
| 6 | 63rd | OF Ray Lankford StL |
| 7 | 82nd | 1B Jose Offerman Bos |
| 8 | 87th | OF Brian Jordan Atl |
| 9 | 106th | 2B Edgardo Alfonzo NYN |
| 10 | 111th | P Brad Radke Min |
| 11 | 130th | P Mark Wohlers Atl |
| 12 | 135th | P Rick Reed NYN |
| 13 | 154th | P Joey Hamilton Tor |
| 14 | 159th | C Mike Lieberthal Phi |
| 15 | 178th | OF Brady Anderson Bal |
| 16 | 183rd | P Sterling Hitchcock SD |
| 17 | 202nd | 1B Eric Karros LA |
| 18 | 207th | P Danny Graves Cin |
| 19 | 226th | C Darrin Fletcher Tor |
| 20 | 231st | SS Pat Meares Pit |
| 21 | 250th | P Carl Pavano Mon |
| 22 | 255th | 3B Aaron Boone Cin |
| 23 | 274th | OF Tony Womack Ari |
| 24 | 279th | SS Alex Gonzalez Tor |
| 25 | 298th | P Todd Jones Det |
| 26 | 303rd | P Jose Rosado KC |
| 27 | 322nd | SS Orlando Cabrera Mon |