| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 2B Craig Biggio Hou |
| 2 | 21st | OF Larry Walker Col |
| 3 | 28th | OF Andruw Jones Atl |
| 4 | 45th | P Mike Mussina Bal |
| 5 | 52nd | OF Dante Bichette Col |
| 6 | 69th | 1B Todd Helton Col |
| 7 | 76th | P Troy Percival Ana |
| 8 | 93rd | DH Matt Stairs Oak |
| 9 | 100th | P Dustin Hermanson Mon |
| 10 | 117th | 3B Jeff Cirillo Mil |
| 11 | 124th | SS Mike Caruso ChA |
| 12 | 141st | P Billy Taylor Oak |
| 13 | 148th | P Carlos Perez LA |
| 14 | 165th | OF Ron Gant Phi |
| 15 | 172nd | 3B Matt Williams Ari |
| 16 | 189th | P Mike Timlin Bal |
| 17 | 196th | P Shawn Estes SF |
| 18 | 213th | 1B Sean Casey Cin |
| 19 | 220th | P Steve Woodard Mil |
| 20 | 237th | C Kelly Stinnett Ari |
| 21 | 244th | 2B Miguel Cairo TB |
| 22 | 261st | SS Rich Aurilia SF |
| 23 | 268th | P Bret Saberhagen Bos |
| 24 | 285th | OF Tom Goodwin Tex |
| 25 | 292nd | P Matt Mantei Fla |
| 26 | 309th | OF Carlos Beltran KC |
| 27 | 316th | C Bill Haselman Det |