| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Ken Griffey Jr Cin |
| 2 | 23rd | SP Kevin Brown LA |
| 3 | 26th | OF Shawn Green LA |
| 4 | 47th | RP Armando Benitez NYN |
| 5 | 50th | OF Moises Alou Hou |
| 6 | 71st | 3B Matt Williams Ari |
| 7 | 74th | 1B Richie Sexson Cle |
| 8 | 95th | SP Orlando Hernandez NYA |
| 9 | 98th | 1B Kevin Young Pit |
| 10 | 119th | SS Rich Aurilia SF |
| 11 | 122nd | OF Shannon Stewart Tor |
| 12 | 143rd | C Todd Hundley LA |
| 13 | 146th | DH Edgar Martinez Sea |
| 14 | 167th | OF Troy O'Leary Bos |
| 15 | 170th | 2B Bret Boone SD |
| 16 | 191st | OF Preston Wilson Fla |
| 17 | 194th | SP Kip Wells ChA |
| 18 | 215th | SS Alfonso Soriano NYA |
| 19 | 218th | SP Jeff Weaver Det |
| 20 | 239th | SP Roy Halladay Tor |
| 21 | 242nd | OF B.J. Surhoff Bal |
| 22 | 263rd | 2B Fernando Vina StL |
| 23 | 266th | SP Mark Mulder Oak |
| 24 | 287th | SP Bruce Chen Atl |
| 25 | 290th | C Chris Widger Mon |
| 26 | 311th | 1B Nick Johnson NYA |
| 27 | 314th | 1B J.T. Snow SF |