| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | OF Andruw Jones Atl |
| 3 | 25th | RP Mariano Rivera NYA |
| 4 | 48th | SP Mike Mussina Bal |
| 5 | 49th | 3B Troy Glaus Ana |
| 6 | 72nd | OF Carlos Beltran KC |
| 7 | 73rd | 1B Sean Casey Cin |
| 8 | 96th | OF Juan Encarnacion Det |
| 9 | 97th | OF J.D. Drew StL |
| 10 | 120th | RP Mike Jackson Phi |
| 11 | 121st | SP Kerry Wood ChN |
| 12 | 144th | C Jorge Posada NYA |
| 13 | 145th | SP Chan Ho Park LA |
| 14 | 168th | 2B Todd Walker Min |
| 15 | 169th | 3B Aramis Ramirez Pit |
| 16 | 192nd | 1B Ryan Klesko SD |
| 17 | 193rd | OF Geoff Jenkins Mil |
| 18 | 216th | SP Ryan Rupe TB |
| 19 | 217th | SP Justin Thompson Tex |
| 20 | 240th | 2B Pokey Reese Cin |
| 21 | 241st | OF Brady Anderson Bal |
| 22 | 264th | C Eli Marrero StL |
| 23 | 265th | SS Royce Clayton Tex |
| 24 | 288th | SP Ramon Ortiz Ana |
| 25 | 289th | SP Bret Saberhagen Bos |
| 26 | 312th | 1B Brad Fullmer Tor |
| 27 | 313th | RP Mike Williams Pit |