| Round | Overall | Player |
|---|---|---|
| 1 | 8th | C Mike Piazza NYN |
| 2 | 17th | 3B Scott Rolen Phi |
| 3 | 32nd | SP Greg Maddux Atl |
| 4 | 41st | 2B Ray Durham ChA |
| 5 | 56th | OF Tim Salmon Ana |
| 6 | 65th | SS Barry Larkin Cin |
| 7 | 80th | RP Roberto Hernandez TB |
| 8 | 89th | C Jason Varitek Bos |
| 9 | 104th | SP Roger Clemens NYA |
| 10 | 113th | 1B Erubiel Durazo Ari |
| 11 | 128th | 1B Pat Burrell Phi |
| 12 | 137th | SP Jamie Moyer Sea |
| 13 | 152nd | C Ben Petrick Col |
| 14 | 161st | 2B Eric Young ChN |
| 15 | 176th | C Darrin Fletcher Tor |
| 16 | 185th | SP Darryl Kile StL |
| 17 | 200th | RP Danny Graves Cin |
| 18 | 209th | RP Rick Aguilera ChN |
| 19 | 224th | OF Jay Buhner Sea |
| 20 | 233rd | SP Jon Lieber ChN |
| 21 | 248th | SP Todd Stottlemyre Ari |
| 22 | 257th | SP John Smoltz Atl |
| 23 | 272nd | RP Rod Beck Bos |
| 24 | 281st | 3B John Valentin Bos |
| 25 | 296th | SP Eric Gagne LA |
| 26 | 305th | OF Chris Singleton ChA |
| 27 | 320th | DH Jeremy Giambi Oak |