| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Jeff Bagwell Hou |
| 2 | 19th | 3B Fernando Tatis StL |
| 3 | 30th | 1B Carlos Delgado Tor |
| 4 | 43rd | 2B Jay Bell Ari |
| 5 | 54th | RP Troy Percival Ana |
| 6 | 67th | SS Miguel Tejada Oak |
| 7 | 78th | OF Greg Vaughn TB |
| 8 | 91st | SP Jose Lima Hou |
| 9 | 102nd | SP Pete Harnisch Cin |
| 10 | 115th | RP Paul Shuey Cle |
| 11 | 126th | OF Jeffrey Hammonds Col |
| 12 | 139th | SP Andy Pettitte NYA |
| 13 | 150th | RP Jason Isringhausen Oak |
| 14 | 163rd | OF Ruben Mateo Tex |
| 15 | 174th | C Sandy Alomar Jr. Cle |
| 16 | 187th | 3B Michael Barrett Mon |
| 17 | 198th | OF Cliff Floyd Fla |
| 18 | 211th | 1B Brian Daubach Bos |
| 19 | 222nd | SP Jeff Suppan KC |
| 20 | 235th | RP Kazuhiro Sasaki Sea |
| 21 | 246th | C Mitch Meluskey Hou |
| 22 | 259th | SP Brad Penny Fla |
| 23 | 270th | SP Gil Meche Sea |
| 24 | 283rd | SP Scott Erickson Bal |
| 25 | 294th | OF Henry Rodriguez ChN |
| 26 | 307th | SP Ed Yarnall NYA |
| 27 | 318th | RP Francisco Cordero Tex |