| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Vladimir Guerrero Mon |
| 2 | 14th | OF Sammy Sosa ChN |
| 3 | 35th | 1B Jim Thome Cle |
| 4 | 38th | 2B Ray Durham ChA |
| 5 | 59th | SS Edgar Renteria StL |
| 6 | 62nd | 3B Dean Palmer Det |
| 7 | 83rd | OF Shannon Stewart Tor |
| 8 | 86th | RP Troy Percival Ana |
| 9 | 107th | RP Robb Nen SF |
| 10 | 110th | SP Shane Reynolds Hou |
| 11 | 131st | SP Eric Milton Min |
| 12 | 134th | OF Darin Erstad Ana |
| 13 | 155th | SP Jeff Suppan KC |
| 14 | 158th | SP Carl Pavano Mon |
| 15 | 179th | SP Steve Woodard Mil |
| 16 | 182nd | 2B Carlos Febles KC |
| 17 | 203rd | SP Ryan Rupe TB |
| 18 | 206th | SP Jeff Weaver Det |
| 19 | 227th | C Eli Marrero StL |
| 20 | 230th | OF Ruben Rivera SD |
| 21 | 251st | 1B Brian Daubach Bos |
| 22 | 254th | SP Hideki Irabu Mon |
| 23 | 275th | SP Eric Gagne LA |
| 24 | 278th | C A.J. Hinch Oak |
| 25 | 299th | OF Richard Hidalgo Hou |
| 26 | 302nd | OF Todd Greene Tor |
| 27 | 323rd | RP Matt Anderson Det |