| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Nomar Garciaparra Bos |
| 2 | 23rd | 3B Scott Rolen Phi |
| 3 | 26th | 2B Craig Biggio Hou |
| 4 | 47th | OF Raul Mondesi Tor |
| 5 | 50th | C Javy Lopez Atl |
| 6 | 71st | 3B Vinny Castilla TB |
| 7 | 74th | SS Barry Larkin Cin |
| 8 | 95th | OF Ben Grieve Oak |
| 9 | 98th | OF Tim Salmon Ana |
| 10 | 119th | RP Jeff Shaw LA |
| 11 | 122nd | RP John Rocker Atl |
| 12 | 143rd | 1B Richie Sexson Cle |
| 13 | 146th | SP Tom Glavine Atl |
| 14 | 167th | RP Danny Graves Cin |
| 15 | 170th | RP Derek Lowe Bos |
| 16 | 191st | SP Chan Ho Park LA |
| 17 | 194th | OF Kenny Lofton Cle |
| 18 | 215th | OF Jim Edmonds StL |
| 19 | 218th | DH John Jaha Oak |
| 20 | 239th | SP Pat Hentgen StL |
| 21 | 242nd | SP Mike Sirotka ChA |
| 22 | 263rd | DH Robert Fick Det |
| 23 | 266th | SP Kelvim Escobar Tor |
| 24 | 287th | SP Jon Lieber ChN |
| 25 | 290th | C Mitch Meluskey Hou |
| 26 | 311th | SS Alfonso Soriano NYA |
| 27 | 314th | 2B Carlos Guillen Sea |