| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Ivan Rodriguez Tex |
| 2 | 21st | OF Barry Bonds SF |
| 3 | 28th | SP Greg Maddux Atl |
| 4 | 45th | 3B Tony Batista Tor |
| 5 | 52nd | OF Larry Walker Col |
| 6 | 69th | SS Neifi Perez Col |
| 7 | 76th | SP Tom Glavine Atl |
| 8 | 93rd | SP Curt Schilling Ari |
| 9 | 100th | 2B Todd Walker Col |
| 10 | 117th | OF Jeromy Burnitz Mil |
| 11 | 124th | 1B Paul Konerko ChA |
| 12 | 141st | OF Cliff Floyd Fla |
| 13 | 148th | C Ben Petrick Col |
| 14 | 165th | RP Dave Veres StL |
| 15 | 172nd | RP Bob Wickman Cle |
| 16 | 189th | SP Dave Burba Cle |
| 17 | 196th | 2B Damion Easley Det |
| 18 | 213th | SS Barry Larkin Cin |
| 19 | 220th | OF Carlos Beltran KC |
| 20 | 237th | OF Rondell White ChN |
| 21 | 244th | 3B Bill Mueller ChN |
| 22 | 261st | SP Jose Lima Hou |
| 23 | 268th | SP Brian Moehler Det |
| 24 | 285th | OF Steve Finley Ari |
| 25 | 292nd | 1B Rico Brogna Atl |
| 26 | 309th | 3B Todd Zeile NYN |
| 27 | 316th | OF Travis Lee Phi |
| 28 | 333rd | SP John Halama Sea |
| 29 | 340th | 1B Mo Vaughn Ana |