| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Randy Johnson Ari |
| 2 | 16th | RP Derek Lowe Bos |
| 3 | 33rd | OF Bernie Williams NYA |
| 4 | 40th | RP Troy Percival Ana |
| 5 | 57th | SP Andy Pettitte NYA |
| 6 | 64th | 1B Jim Thome Cle |
| 7 | 81st | OF Ben Grieve TB |
| 8 | 88th | DH Edgar Martinez Sea |
| 9 | 105th | OF Kenny Lofton Cle |
| 10 | 112th | SP Brad Radke Min |
| 11 | 129th | SP Jeff Suppan KC |
| 12 | 136th | OF Ichiro Suzuki Sea |
| 13 | 153rd | DH Andres Galarraga Tex |
| 14 | 160th | 1B John Olerud Sea |
| 15 | 177th | 2B Chuck Knoblauch NYA |
| 16 | 184th | OF Jose Cruz Jr Tor |
| 17 | 201st | RP Tom Gordon ChN |
| 18 | 208th | OF Ron Gant Col |
| 19 | 225th | SP Steve Trachsel NYN |
| 20 | 232nd | 2B Jose Offerman Bos |
| 21 | 249th | 3B Cal Ripken Bal |
| 22 | 256th | OF Troy O'Leary Bos |
| 23 | 273rd | C John Flaherty TB |
| 24 | 280th | 3B John Valentin Bos |
| 25 | 297th | SP Matt Kinney Min |
| 26 | 304th | OF Dee Brown KC |
| 27 | 321st | RP Rich Garces Bos |
| 28 | 328th | SS Melvin Mora Bal |
| 29 | 345th | SP David Cone Bos |