| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | C Jason Kendall Pit |
| 3 | 25th | OF Barry Bonds SF |
| 4 | 48th | 3B Scott Rolen Phi |
| 5 | 49th | OF Gary Sheffield LA |
| 6 | 72nd | SP Curt Schilling Ari |
| 7 | 73rd | 2B Ray Durham ChA |
| 8 | 96th | SP Ryan Dempster Fla |
| 9 | 97th | RP Anthony Alford Fla |
| 10 | 120th | RP Todd Jones Det |
| 11 | 121st | SP Freddy Garcia Sea |
| 12 | 144th | OF Jeromy Burnitz Mil |
| 13 | 145th | SP Brian Anderson Ari |
| 14 | 168th | 2B Quilvio Veras Atl |
| 15 | 169th | 1B Eric Karros LA |
| 16 | 192nd | 3B Matt Williams Ari |
| 17 | 193rd | SP Woody Williams SD |
| 18 | 216th | OF Russ Branyan Cle |
| 19 | 217th | C Ben Molina Ana |
| 20 | 240th | 1B Chris Richard Bal |
| 21 | 241st | 3B Alfonso Soriano NYA |
| 22 | 264th | SP Jeff Suppan KC |
| 23 | 265th | OF Ray Lankford StL |
| 24 | 288th | SP John Halama Sea |
| 25 | 289th | SP Pedro Astacio Col |
| 26 | 312th | OF Travis Lee Phi |
| 27 | 313th | SP Jamey Wright Mil |
| 28 | 336th | SP Garrett Stephenson StL |
| 29 | 337th | RP Jose Mesa Phi |