| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Ivan Rodriguez Tex |
| 2 | 23rd | 1B Frank Thomas ChA |
| 3 | 26th | 3B Scott Rolen Phi |
| 4 | 47th | OF Juan Gonzalez Cle |
| 5 | 50th | OF Bernie Williams NYA |
| 6 | 71st | 3B Fernando Tatis Mon |
| 7 | 74th | OF Geoff Jenkins Mil |
| 8 | 95th | RP Jason Isringhausen Oak |
| 9 | 98th | RP Danny Graves Cin |
| 10 | 119th | RP Dave Veres StL |
| 11 | 122nd | SP Kerry Wood ChN |
| 12 | 143rd | SP Scott Elarton Hou |
| 13 | 146th | 2B Jose Ortiz Oak |
| 14 | 167th | SP Russ Ortiz SF |
| 15 | 170th | SS Neifi Perez Col |
| 16 | 191st | OF Garret Anderson Ana |
| 17 | 194th | OF Russ Branyan Cle |
| 18 | 215th | SP Scott Williamson Cin |
| 19 | 218th | 1B Tony Clark Det |
| 20 | 239th | 2B Damion Easley Det |
| 21 | 242nd | OF Matt Lawton Ret |
| 22 | 263rd | SP Andy Benes StL |
| 23 | 266th | SP Jason Schmidt Pit |
| 24 | 287th | SP John Halama Sea |
| 25 | 290th | SP Rob Bell Cin |
| 26 | 311th | SP Steve Trachsel NYN |
| 27 | 314th | SS Carlos Guillen Sea |
| 28 | 335th | OF Derek Bell Pit |
| 29 | 338th | C Brent Mayne Col |