| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | 2B Edgardo Alfonzo NYN |
| 3 | 27th | SS Miguel Tejada Oak |
| 4 | 46th | OF Magglio Ordonez ChA |
| 5 | 51st | OF Larry Walker Col |
| 6 | 70th | OF Johnny Damon Oak |
| 7 | 75th | OF Jermaine Dye KC |
| 8 | 94th | RP Ugueth Urbina Mon |
| 9 | 99th | RP Bob Wickman Cle |
| 10 | 118th | 3B Matt Williams Ari |
| 11 | 123rd | RP Roberto Hernandez KC |
| 12 | 142nd | 3B Robin Ventura NYN |
| 13 | 147th | OF Kenny Lofton Cle |
| 14 | 166th | SP Robert Person Phi |
| 15 | 171st | SP Pete Harnisch Cin |
| 16 | 190th | SP Brian Anderson Ari |
| 17 | 195th | C Ben Petrick Col |
| 18 | 214th | SP James Baldwin ChA |
| 19 | 219th | SP Tony Armas Jr. Mon |
| 20 | 238th | C Damian Miller Ari |
| 21 | 243rd | SP Pedro Astacio Col |
| 22 | 262nd | 2B Bret Boone Sea |
| 23 | 267th | SP Jamey Wright Mil |
| 24 | 286th | SP Garrett Stephenson StL |
| 25 | 291st | SS Melvin Mora Bal |
| 26 | 310th | RP Wade Miller Hou |
| 27 | 315th | DH John Jaha Oak |
| 28 | 334th | SP Britt Reames Mon |
| 29 | 339th | RP Jose Mesa Phi |