| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Barry Bonds SF |
| 3 | 25th | 1B Frank Thomas ChA |
| 4 | 48th | 3B Tony Batista Tor |
| 5 | 49th | SP Ryan Dempster Fla |
| 6 | 72nd | OF Shawn Green LA |
| 7 | 73rd | SP Livan Hernandez SF |
| 8 | 96th | 2B Luis Castillo Fla |
| 9 | 97th | RP John Rocker Atl |
| 10 | 120th | OF Lance Berkman Hou |
| 11 | 121st | SP Rick Ankiel StL |
| 12 | 144th | RP Todd Jones Det |
| 13 | 145th | SP Darren Dreifort LA |
| 14 | 168th | SP Bruce Chen Phi |
| 15 | 169th | DH Andres Galarraga Tex |
| 16 | 192nd | C Brook Fordyce Bal |
| 17 | 193rd | SP Brian Moehler Det |
| 18 | 216th | OF Terrence Long Oak |
| 19 | 217th | RP Mike Williams Pit |
| 20 | 240th | C Ramon Hernandez Oak |
| 21 | 241st | SP James Baldwin ChA |
| 22 | 264th | SS Ricky Gutierrez ChN |
| 23 | 265th | 3B Todd Zeile NYN |
| 24 | 288th | 2B Ron Belliard Mil |
| 25 | 289th | 3B Herbert Perry ChA |
| 26 | 312th | OF Mark Kotsay SD |
| 27 | 313th | SS Mark Loretta Mil |
| 28 | 336th | OF Ron Gant Col |
| 29 | 337th | SP Jamey Wright Mil |