| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Randy Johnson Ari |
| 2 | 16th | 3B Scott Rolen Phi |
| 3 | 33rd | SP Tom Glavine Atl |
| 4 | 40th | OF Darin Erstad Ana |
| 5 | 57th | OF Gary Sheffield LA |
| 6 | 64th | SP Al Leiter NYN |
| 7 | 81st | OF Raul Mondesi Tor |
| 8 | 88th | 2B Craig Biggio Hou |
| 9 | 105th | SP Kevin Millwood Atl |
| 10 | 112th | RP John Smoltz Atl |
| 11 | 129th | C Ben Petrick Col |
| 12 | 136th | RP Matt Mantei Ari |
| 13 | 153rd | 1B David Segui Bal |
| 14 | 160th | SS Tony Womack Ari |
| 15 | 177th | OF Ellis Burks Cle |
| 16 | 184th | 3B Alfonso Soriano NYA |
| 17 | 201st | 1B John Olerud Sea |
| 18 | 208th | RP Byung-Hyun Kim Ari |
| 19 | 225th | SS Melvin Mora Bal |
| 20 | 232nd | SP Jose Lima Hou |
| 21 | 249th | 2B Fernando Vina StL |
| 22 | 256th | SS Mike Bordick Bal |
| 23 | 273rd | 2B Placido Polanco StL |
| 24 | 280th | OF Tony Gwynn SD |
| 25 | 297th | OF Juan Pierre Col |
| 26 | 304th | SP Jason Marquis Atl |
| 27 | 321st | C Paul Bako Atl |
| 28 | 328th | C Keith McDonald StL |
| 29 | 345th | SP Octavio Dotel Hou |