| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Jason Giambi Oak |
| 2 | 13th | 3B Troy Glaus Ana |
| 3 | 36th | 1B Mark McGwire StL |
| 4 | 37th | 2B Jose Vidro Mon |
| 5 | 60th | RP Billy Koch Tor |
| 6 | 61st | RP Armando Benitez NYN |
| 7 | 84th | SP Barry Zito Oak |
| 8 | 85th | SP Kerry Wood ChN |
| 9 | 108th | OF David Justice NYA |
| 10 | 109th | SP Orlando Hernandez NYA |
| 11 | 132nd | SS Barry Larkin Cin |
| 12 | 133rd | OF Ichiro Suzuki Sea |
| 13 | 156th | DH Edgar Martinez Sea |
| 14 | 157th | SP Jon Lieber ChN |
| 15 | 180th | SP Mark Mulder Oak |
| 16 | 181st | C Darrin Fletcher Tor |
| 17 | 204th | OF Kenny Lofton Cle |
| 18 | 205th | SP Kevin Appier NYN |
| 19 | 228th | 1B Chris Richard Bal |
| 20 | 229th | 3B Matt Williams Ari |
| 21 | 252nd | 2B Carlos Febles KC |
| 22 | 253rd | OF Gabe Kapler Tex |
| 23 | 276th | SP Randy Wolf Phi |
| 24 | 277th | SP Adam Eaton SD |
| 25 | 300th | SP Mike Sirotka Tor |
| 26 | 301st | OF Ray Lankford StL |
| 27 | 324th | C Mike Matheny StL |
| 28 | 325th | SP Jeff Suppan KC |
| 29 | 348th | SS Rey Sanchez KC |