| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Barry Bonds SF |
| 2 | 20th | P Mike Mussina Bal |
| 3 | 29th | OF Manny Ramirez Cle |
| 4 | 44th | 1B Eric Karros LA |
| 5 | 53rd | 2B Ryne Sandberg ChN |
| 6 | 68th | C Javy Lopez Atl |
| 7 | 77th | DH Chili Davis KC |
| 8 | 92nd | P Jason Isringhausen NYN |
| 9 | 101st | OF Marty Cordova Min |
| 10 | 116th | SS Shawon Dunston Pit |
| 11 | 125th | P Orel Hershiser Cle |
| 12 | 140th | OF B.J. Surhoff Bal |
| 13 | 149th | P David Wells NYA |
| 14 | 164th | DH Paul Molitor Min |
| 15 | 173rd | P Dave Stevens ChN |
| 16 | 188th | P Sterling Hitchcock SD |
| 17 | 197th | OF Bernard Gilkey NYN |
| 18 | 212th | SS Benji Gil Tex |
| 19 | 221st | OF Mark Whiten NYA |
| 20 | 236th | OF Ellis Burks Col |
| 21 | 245th | C Dan Wilson Sea |
| 22 | 260th | P Scott Kamieniecki Bal |
| 23 | 269th | 2B Eric Young Col |
| 24 | 284th | 1B Jeff King KC |
| 25 | 293rd | SS Pat Meares Min |
| 26 | 308th | OF Tony Tarasco Bal |